IL_4V6X_003
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GAC*GCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_003 not in the Motif Atlas
- Geometric match to IL_4J50_001
- Geometric discrepancy: 0.1828
- The information below is about IL_4J50_001
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- Isolated cWH basepair
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
4V6X|1|A5|G|16
4V6X|1|A5|A|17
4V6X|1|A5|C|18
*
4V6X|1|A8|G|139
4V6X|1|A8|C|140
4V6X|1|A8|C|141
Current chains
- Chain A5
- 28S ribosomal RNA
- Chain A8
- 5.8S ribosomal RNA
Nearby chains
- Chain CN
- 60S ribosomal protein L15
- Chain CX
- 60S ribosomal protein L23a
- Chain Ch
- 60S ribosomal protein L35
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