IL_4V6X_015
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 4V6X|1|A5|G|409, 4V6X|1|A5|G|413
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_015 not in the Motif Atlas
- Homologous match to IL_5TBW_014
- Geometric discrepancy: 0.1292
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
4V6X|1|A5|G|387
4V6X|1|A5|A|388
4V6X|1|A5|A|389
4V6X|1|A5|C|390
*
4V6X|1|A5|G|401
4V6X|1|A5|A|402
4V6X|1|A5|G|403
4V6X|1|A5|U|404
4V6X|1|A5|U|405
4V6X|1|A5|C|406
4V6X|1|A5|A|407
4V6X|1|A5|A|408
4V6X|1|A5|G|409
4V6X|1|A5|A|410
4V6X|1|A5|G|411
4V6X|1|A5|G|412
4V6X|1|A5|G|413
4V6X|1|A5|C|414
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain A8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CP
- 60S ribosomal protein L17
- Chain CY
- 60S ribosomal protein L26
- Chain Cl
- 60S ribosomal protein L39
Coloring options: