IL_4V6X_016
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_016 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.1074
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V6X|1|A5|G|415
4V6X|1|A5|U|416
4V6X|1|A5|G|417
4V6X|1|A5|A|418
4V6X|1|A5|A|419
4V6X|1|A5|A|420
4V6X|1|A5|C|421
*
4V6X|1|A8|G|13
4V6X|1|A8|U|14
4V6X|1|A8|G|15
4V6X|1|A8|G|16
4V6X|1|A8|A|17
4V6X|1|A8|U|18
4V6X|1|A8|C|19
Current chains
- Chain A5
- 28S ribosomal RNA
- Chain A8
- 5.8S ribosomal RNA
Nearby chains
- Chain CC
- 60S ribosomal protein L4
- Chain CP
- 60S ribosomal protein L17
- Chain Ce
- 60S ribosomal protein L32
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