IL_4V6X_023

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCC*GCGAC

Length

8 nucleotides

Bulged bases

4V6X|1|A5|G|666

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_023 not in the Motif Atlas

Geometric match to IL_4M6D_013

Geometric discrepancy: 0.3124

The information below is about IL_4M6D_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V6X|1|A5|G|488
4V6X|1|A5|C|489
4V6X|1|A5|C|490
*
4V6X|1|A5|G|664
4V6X|1|A5|C|665
4V6X|1|A5|G|666
4V6X|1|A5|A|667
4V6X|1|A5|C|668

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain Cr

60S ribosomal protein L28