IL_4V6X_027

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCCCG*UC

Length

7 nucleotides

Bulged bases

4V6X|1|A5|C|501, 4V6X|1|A5|C|502, 4V6X|1|A5|C|503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_027 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2062

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

4V6X|1|A5|G|500
4V6X|1|A5|C|501
4V6X|1|A5|C|502
4V6X|1|A5|C|503
4V6X|1|A5|G|504
*
4V6X|1|A5|U|653
4V6X|1|A5|C|654

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4