IL_4V6X_031

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CC*GUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_031 not in the Motif Atlas

Geometric match to IL_4V9F_005

Geometric discrepancy: 0.2101

The information below is about IL_4V9F_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

4V6X|1|A5|C|520
4V6X|1|A5|C|521
*
4V6X|1|A5|G|638
4V6X|1|A5|U|639
4V6X|1|A5|C|640
4V6X|1|A5|G|641

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CL

60S ribosomal protein L13