IL_4V6X_045

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CCAC*GGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_045 not in the Motif Atlas

Geometric match to IL_4V84_070

Geometric discrepancy: 0.2928

The information below is about IL_4V84_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23164.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

4V6X|1|A5|C|1104
4V6X|1|A5|C|1105
4V6X|1|A5|A|1106
4V6X|1|A5|C|1107
*
4V6X|1|A5|G|1163
4V6X|1|A5|G|1164
4V6X|1|A5|G|1165

Current chains

Chain A5

28S ribosomal RNA

Nearby chains