IL_4V6X_050

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_050 not in the Motif Atlas

Geometric match to IL_1SAQ_002

Geometric discrepancy: 0.1611

The information below is about IL_1SAQ_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V6X|1|A5|C|1431
4V6X|1|A5|G|1432
4V6X|1|A5|A|1433
4V6X|1|A5|G|1434
*
4V6X|1|A5|C|1450
4V6X|1|A5|G|1451
4V6X|1|A5|A|1452
4V6X|1|A5|G|1453

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CQ

60S ribosomal protein L18