IL_4V6X_055

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCGAAG*UGGAGGU

Length

13 nucleotides

Bulged bases

4V6X|1|A5|G|1577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_055 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.2621

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V6X|1|A5|G|1550
4V6X|1|A5|C|1551
4V6X|1|A5|G|1552
4V6X|1|A5|A|1553
4V6X|1|A5|A|1554
4V6X|1|A5|G|1555
*
4V6X|1|A5|U|1572
4V6X|1|A5|G|1573
4V6X|1|A5|G|1574
4V6X|1|A5|A|1575
4V6X|1|A5|G|1576
4V6X|1|A5|G|1577
4V6X|1|A5|U|1578

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CA

60S ribosomal protein L8

Chain CR

60S ribosomal protein L19

Chain Cp

60S ribosomal protein L37a