IL_4V6X_058
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 4V6X|1|A5|G|1625, 4V6X|1|A5|A|1637, 4V6X|1|A5|A|1638
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_058 not in the Motif Atlas
- Geometric match to IL_7A0S_021
- Geometric discrepancy: 0.1235
- The information below is about IL_7A0S_021
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_89509.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
4V6X|1|A5|G|1624
4V6X|1|A5|G|1625
4V6X|1|A5|G|1626
*
4V6X|1|A5|U|1636
4V6X|1|A5|A|1637
4V6X|1|A5|A|1638
4V6X|1|A5|U|1639
4V6X|1|A5|C|1640
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain CA
- 60S ribosomal protein L8
- Chain CN
- 60S ribosomal protein L15
- Chain CP
- 60S ribosomal protein L17
- Chain Cj
- 60S ribosomal protein L37
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