IL_4V6X_062

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

AGU*AAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_062 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.2556

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4V6X|1|A5|A|1723
4V6X|1|A5|G|1724
4V6X|1|A5|U|1725
*
4V6X|1|A5|A|1837
4V6X|1|A5|A|1838
4V6X|1|A5|U|1839

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CF

60S ribosomal protein L7

Chain CQ

60S ribosomal protein L18

Chain CT

60S ribosomal protein L21

Chain Cb

60S ribosomal protein L29