IL_4V6X_069

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

4V6X|1|A5|G|1815

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_069 not in the Motif Atlas

Homologous match to IL_8C3A_048

Geometric discrepancy: 0.2893

The information below is about IL_8C3A_048

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

4V6X|1|A5|C|1814
4V6X|1|A5|G|1815
4V6X|1|A5|C|1816
*
4V6X|1|A5|G|1823
4V6X|1|A5|G|1824

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L5

Chain CT

60S ribosomal protein L21

Chain Cb

60S ribosomal protein L29