IL_4V6X_078

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

4V6X|1|A5|U|1947

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_078 not in the Motif Atlas

Homologous match to IL_8C3A_056

Geometric discrepancy: 0.1909

The information below is about IL_8C3A_056

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V6X|1|A5|G|1946
4V6X|1|A5|U|1947
4V6X|1|A5|G|1948
*
4V6X|1|A5|C|2035
4V6X|1|A5|C|2036

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain A7

5S ribosomal RNA; 5S rRNA

Chain CH

60S ribosomal protein L9

Chain CI

60S ribosomal protein L10-like

Chain CS

60S ribosomal protein L18a

Chain Cm

60S ribosomal protein L40