IL_4V6X_081

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4V6X|1|A5|A|2002

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_081 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.1928

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4V6X|1|A5|G|2001
4V6X|1|A5|A|2002
4V6X|1|A5|G|2003
4V6X|1|A5|U|2004
4V6X|1|A5|G|2005
*
4V6X|1|A5|C|2014
4V6X|1|A5|U|2015
4V6X|1|A5|C|2016

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CK

60S ribosomal protein L12

Chain Cq

60S acidic ribosomal protein P0