IL_4V6X_082

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

4V6X|1|A5|C|2084

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_082 not in the Motif Atlas

Geometric match to IL_3W3S_001

Geometric discrepancy: 0.2957

The information below is about IL_3W3S_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

4V6X|1|A5|C|2083
4V6X|1|A5|C|2084
4V6X|1|A5|G|2085
*
4V6X|1|A5|C|2272
4V6X|1|A5|G|2273

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CF

60S ribosomal protein L7

Chain CQ

60S ribosomal protein L18

Chain Ce

60S ribosomal protein L32