IL_4V6X_092

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_092 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.3129

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

4V6X|1|A5|G|2542
4V6X|1|A5|A|2543
4V6X|1|A5|G|2544
4V6X|1|A5|U|2545
4V6X|1|A5|G|2546
4V6X|1|A5|G|2547
*
4V6X|1|A5|C|2772
4V6X|1|A5|G|2773
4V6X|1|A5|C|2774

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain A8

5.8S ribosomal RNA; 5.8S rRNA

Chain Ck

60S ribosomal protein L38