IL_4V6X_093

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GG*UCUC

Length

6 nucleotides

Bulged bases

4V6X|1|A5|C|2768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_093 not in the Motif Atlas

Geometric match to IL_5TBW_035

Geometric discrepancy: 0.3226

The information below is about IL_5TBW_035

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

4V6X|1|A5|G|2549
4V6X|1|A5|G|2550
*
4V6X|1|A5|U|2767
4V6X|1|A5|C|2768
4V6X|1|A5|U|2769
4V6X|1|A5|C|2770

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain Cg

60S ribosomal protein L34

Chain Ck

60S ribosomal protein L38