IL_4V6X_099

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UGGAAUGG*CCGAGAGA

Length

16 nucleotides

Bulged bases

4V6X|1|A5|U|2661, 4V6X|1|A5|A|2674

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|A5|U|2656
4V6X|1|A5|G|2657
4V6X|1|A5|G|2658
4V6X|1|A5|A|2659
4V6X|1|A5|A|2660
4V6X|1|A5|U|2661
4V6X|1|A5|G|2662
4V6X|1|A5|G|2663
*
4V6X|1|A5|C|2671
4V6X|1|A5|C|2672
4V6X|1|A5|G|2673
4V6X|1|A5|A|2674
4V6X|1|A5|G|2675
4V6X|1|A5|A|2676
4V6X|1|A5|G|2677
4V6X|1|A5|A|2678

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S13

Chain CR

60S ribosomal protein L19

Chain CZ

60S ribosomal protein L27

Chain Cc

60S ribosomal protein L30

Chain Cg

60S ribosomal protein L34

Chain Cp

60S ribosomal protein L37a