IL_4V6X_100

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

4V6X|1|A5|G|2711

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_100 not in the Motif Atlas

Homologous match to IL_8GLP_102

Geometric discrepancy: 0.5606

The information below is about IL_8GLP_102

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

4V6X|1|A5|C|2704
4V6X|1|A5|G|2705
*
4V6X|1|A5|C|2710
4V6X|1|A5|G|2711
4V6X|1|A5|G|2712

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CR

60S ribosomal protein L19

Chain CU

60S ribosomal protein L22

Chain CX

60S ribosomal protein L23a