IL_4V6X_102

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_102 not in the Motif Atlas

Homologous match to IL_5TBW_075

Geometric discrepancy: 0.1666

The information below is about IL_5TBW_075

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_54997.8

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

4V6X|1|A5|A|2844
4V6X|1|A5|A|2845
4V6X|1|A5|G|2846
*
4V6X|1|A5|C|3842
4V6X|1|A5|C|3843
4V6X|1|A5|U|3844

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CV

60S ribosomal protein L23

Chain CW

60S ribosomal protein L24