IL_4V6X_103

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_103 not in the Motif Atlas

Geometric match to IL_4V9F_061

Geometric discrepancy: 0.1386

The information below is about IL_4V9F_061

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

4V6X|1|A5|G|2847
4V6X|1|A5|G|2848
4V6X|1|A5|A|2849
4V6X|1|A5|A|2850
*
4V6X|1|A5|U|3840
4V6X|1|A5|C|3841

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CV

60S ribosomal protein L23