IL_4V6X_112

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

4V6X|1|A5|U|3709

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_112 not in the Motif Atlas

Geometric match to IL_3WBM_001

Geometric discrepancy: 0.2775

The information below is about IL_3WBM_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

4V6X|1|A5|C|3708
4V6X|1|A5|U|3709
4V6X|1|A5|G|3710
*
4V6X|1|A5|C|3741
4V6X|1|A5|G|3742

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain BC

Transfer RNA; tRNA

Chain CA

60S ribosomal protein L8