IL_4V6X_118

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

4V6X|1|A5|A|3901, 4V6X|1|A5|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_118 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.1377

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V6X|1|A5|G|3900
4V6X|1|A5|A|3901
4V6X|1|A5|A|3902
*
4V6X|1|A5|U|4558
4V6X|1|A5|A|4559
4V6X|1|A5|C|4560
4V6X|1|A5|C|4561

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CP

60S ribosomal protein L17