IL_4V6X_121

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

4V6X|1|A5|G|4183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_121 not in the Motif Atlas

Homologous match to IL_5TBW_095

Geometric discrepancy: 0.1567

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

4V6X|1|A5|U|3927
4V6X|1|A5|A|3928
4V6X|1|A5|G|3929
*
4V6X|1|A5|U|4181
4V6X|1|A5|G|4182
4V6X|1|A5|G|4183
4V6X|1|A5|G|4184

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain BC

Transfer RNA; tRNA

Chain CA

60S ribosomal protein L8

Chain CN

60S ribosomal protein L15

Chain Co

60S ribosomal protein L36a