IL_4V6X_125

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GGGAGG*CCGCCGGUGAAAUACC

Length

22 nucleotides

Bulged bases

4V6X|1|A5|G|4045, 4V6X|1|A5|U|4049

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|A5|G|3969
4V6X|1|A5|G|3970
4V6X|1|A5|G|3971
4V6X|1|A5|A|3972
4V6X|1|A5|G|3973
4V6X|1|A5|G|3974
*
4V6X|1|A5|C|4037
4V6X|1|A5|C|4038
4V6X|1|A5|G|4039
4V6X|1|A5|C|4040
4V6X|1|A5|C|4041
4V6X|1|A5|G|4042
4V6X|1|A5|G|4043
4V6X|1|A5|U|4044
4V6X|1|A5|G|4045
4V6X|1|A5|A|4046
4V6X|1|A5|A|4047
4V6X|1|A5|A|4048
4V6X|1|A5|U|4049
4V6X|1|A5|A|4050
4V6X|1|A5|C|4051
4V6X|1|A5|C|4052

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain BC

Transfer RNA; tRNA

Chain Cz

60S ribosomal protein L10a