IL_4V6X_127

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_127 not in the Motif Atlas

Geometric match to IL_7RQB_058

Geometric discrepancy: 0.2141

The information below is about IL_7RQB_058

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

4V6X|1|A5|G|4095
4V6X|1|A5|C|4096
4V6X|1|A5|G|4097
*
4V6X|1|A5|C|4112
4V6X|1|A5|U|4113

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S3a

Chain CA

60S ribosomal protein L8

Chain Cg

60S ribosomal protein L34