IL_4V6X_139

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

4V6X|1|A5|A|4518, 4V6X|1|A5|C|4519

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_139 not in the Motif Atlas

Homologous match to IL_5TBW_109

Geometric discrepancy: 0.1327

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V6X|1|A5|C|4458
4V6X|1|A5|U|4459
*
4V6X|1|A5|A|4517
4V6X|1|A5|A|4518
4V6X|1|A5|C|4519
4V6X|1|A5|G|4520

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CO

60S ribosomal protein L13a

Chain CV

60S ribosomal protein L23