IL_4V6X_141

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

4V6X|1|A5|A|4488

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_141 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.399

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V6X|1|A5|U|4468
4V6X|1|A5|U|4469
4V6X|1|A5|G|4470
*
4V6X|1|A5|C|4485
4V6X|1|A5|C|4486
4V6X|1|A5|A|4487
4V6X|1|A5|A|4488
4V6X|1|A5|G|4489

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CH

60S ribosomal protein L9

Chain CO

60S ribosomal protein L13a

Chain CV

60S ribosomal protein L23

Chain Cm

60S ribosomal protein L40