IL_4V6X_156

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GUCC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_156 not in the Motif Atlas

Geometric match to IL_4PKD_001

Geometric discrepancy: 0.3665

The information below is about IL_4PKD_001

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

4V6X|1|A5|G|4769
4V6X|1|A5|U|4770
4V6X|1|A5|C|4771
4V6X|1|A5|C|4772
*
4V6X|1|A5|G|4863
4V6X|1|A5|U|4864
4V6X|1|A5|C|4865

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CH

60S ribosomal protein L9

Chain CO

60S ribosomal protein L13a