IL_4V6X_171
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UUAGUAC*GGAAUA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_171 not in the Motif Atlas
- Homologous match to IL_4V9F_106
- Geometric discrepancy: 0.2307
- The information below is about IL_4V9F_106
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
4V6X|1|A7|U|72
4V6X|1|A7|U|73
4V6X|1|A7|A|74
4V6X|1|A7|G|75
4V6X|1|A7|U|76
4V6X|1|A7|A|77
4V6X|1|A7|C|78
*
4V6X|1|A7|G|98
4V6X|1|A7|G|99
4V6X|1|A7|A|100
4V6X|1|A7|A|101
4V6X|1|A7|U|102
4V6X|1|A7|A|103
Current chains
- Chain A7
- 5S ribosomal RNA
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain CD
- 60S ribosomal protein L5
- Chain CF
- 60S ribosomal protein L7
- Chain CI
- 60S ribosomal protein L10-like
- Chain CS
- 60S ribosomal protein L18a
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