IL_4V6X_177

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

4V6X|1|B2|A|516

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_177 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3719

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

4V6X|1|B2|C|37
4V6X|1|B2|A|38
4V6X|1|B2|A|39
4V6X|1|B2|A|40
*
4V6X|1|B2|U|514
4V6X|1|B2|G|515
4V6X|1|B2|A|516
4V6X|1|B2|C|517
4V6X|1|B2|G|518

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AJ

40S ribosomal protein S9

Chain Az

Elongation factor 2