IL_4V6X_185

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_185 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1961

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

4V6X|1|B2|U|116
4V6X|1|B2|C|117
4V6X|1|B2|C|118
4V6X|1|B2|U|119
4V6X|1|B2|U|120
4V6X|1|B2|U|121
*
4V6X|1|B2|A|343
4V6X|1|B2|U|344
4V6X|1|B2|U|345
4V6X|1|B2|C|346
4V6X|1|B2|G|347

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AI

40S ribosomal protein S8