IL_4V6X_188

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCUGAC*GGAUGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_188 not in the Motif Atlas

Geometric match to IL_4N0T_001

Geometric discrepancy: 0.2973

The information below is about IL_4N0T_001

Detailed Annotation

Double sheared; A in syn; two near cWW pairs

Broad Annotation

Double sheared; A in syn; two near cWW pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4V6X|1|B2|G|187
4V6X|1|B2|C|188
4V6X|1|B2|U|189
4V6X|1|B2|G|190
4V6X|1|B2|A|191
4V6X|1|B2|C|192
*
4V6X|1|B2|G|207
4V6X|1|B2|G|208
4V6X|1|B2|A|209
4V6X|1|B2|U|210
4V6X|1|B2|G|211
4V6X|1|B2|C|212

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AI

40S ribosomal protein S8