IL_4V6X_194

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

4V6X|1|B2|U|368, 4V6X|1|B2|C|369

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_194 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2451

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V6X|1|B2|U|366
4V6X|1|B2|U|367
4V6X|1|B2|U|368
4V6X|1|B2|C|369
4V6X|1|B2|G|370
4V6X|1|B2|A|371
*
4V6X|1|B2|U|393
4V6X|1|B2|G|394

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain AI

40S ribosomal protein S8

Chain AL

40S ribosomal protein S11