IL_4V6X_213

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UCUC*GA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_213 not in the Motif Atlas

Geometric match to IL_4YAZ_008

Geometric discrepancy: 0.2315

The information below is about IL_4YAZ_008

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V6X|1|B2|U|747
4V6X|1|B2|C|748
4V6X|1|B2|U|749
4V6X|1|B2|C|750
*
4V6X|1|B2|G|793
4V6X|1|B2|A|794

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AG

40S ribosomal protein S6

Chain AH

40S ribosomal protein S7