IL_4V6X_218

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_218 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.2756

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

4V6X|1|B2|G|874
4V6X|1|B2|A|875
4V6X|1|B2|C|876
*
4V6X|1|B2|G|910
4V6X|1|B2|C|911

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AH

40S ribosomal protein S7

Chain AL

40S ribosomal protein S11

Chain CR

60S ribosomal protein L19