IL_4V6X_220

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

4V6X|1|B2|U|1016

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_220 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1485

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

4V6X|1|B2|G|924
4V6X|1|B2|G|925
4V6X|1|B2|A|926
4V6X|1|B2|C|927
*
4V6X|1|B2|G|1014
4V6X|1|B2|U|1015
4V6X|1|B2|U|1016
4V6X|1|B2|U|1017
4V6X|1|B2|U|1018

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S13

Chain AW

40S ribosomal protein S15a

Chain Ab

40S ribosomal protein S27