IL_4V6X_227

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGAC*GUCUUUGG

Length

12 nucleotides

Bulged bases

4V6X|1|B2|C|1153, 4V6X|1|B2|U|1155, 4V6X|1|B2|G|1157

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|B2|C|1091
4V6X|1|B2|G|1092
4V6X|1|B2|A|1093
4V6X|1|B2|C|1094
*
4V6X|1|B2|G|1151
4V6X|1|B2|U|1152
4V6X|1|B2|C|1153
4V6X|1|B2|U|1154
4V6X|1|B2|U|1155
4V6X|1|B2|U|1156
4V6X|1|B2|G|1157
4V6X|1|B2|G|1158

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AC

40S ribosomal protein S2

Chain AL

40S ribosomal protein S11

Chain AN

40S ribosomal protein S13

Chain AW

40S ribosomal protein S15a

Chain AX

40S ribosomal protein S23

Chain Ab

40S ribosomal protein S27