IL_4V6X_232

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

4V6X|1|B2|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_232 not in the Motif Atlas

Homologous match to IL_4V88_441

Geometric discrepancy: 0.2321

The information below is about IL_4V88_441

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4V6X|1|B2|G|1203
4V6X|1|B2|A|1204
*
4V6X|1|B2|U|1694
4V6X|1|B2|A|1695
4V6X|1|B2|C|1696

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AC

40S ribosomal protein S2

Chain Aa

40S ribosomal protein S26

Chain Ah

Plasminogen activator inhibitor 1 RNA-binding protein