IL_4V6X_235

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_235 not in the Motif Atlas

Homologous match to IL_4V88_444

Geometric discrepancy: 0.2055

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V6X|1|B2|C|1230
4V6X|1|B2|C|1231
4V6X|1|B2|U|1232
*
4V6X|1|B2|G|1526
4V6X|1|B2|C|1527
4V6X|1|B2|G|1528

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AQ

40S ribosomal protein S16

Chain AS

40S ribosomal protein S18

Chain AT

40S ribosomal protein S19

Chain AU

40S ribosomal protein S20

Chain BC

Transfer RNA; tRNA