IL_4V6X_236
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GGC*GCAC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_236 not in the Motif Atlas
- Geometric match to IL_5ML7_010
- Geometric discrepancy: 0.3482
- The information below is about IL_5ML7_010
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_68118.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 29
Unit IDs
4V6X|1|B2|G|1235
4V6X|1|B2|G|1236
4V6X|1|B2|C|1237
*
4V6X|1|B2|G|1520
4V6X|1|B2|C|1521
4V6X|1|B2|A|1522
4V6X|1|B2|C|1523
Current chains
- Chain B2
- 18S ribosomal RNA
Nearby chains
- Chain AP
- 40S ribosomal protein S15
- Chain AS
- 40S ribosomal protein S18
- Chain Ah
- Plasminogen activator inhibitor 1 RNA-binding protein
- Chain BC
- Transfer RNA; tRNA
Coloring options: