IL_4V6X_243

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

4V6X|1|B2|G|1497

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_243 not in the Motif Atlas

Geometric match to IL_8ZA0_002

Geometric discrepancy: 0.3712

The information below is about IL_8ZA0_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

4V6X|1|B2|U|1333
4V6X|1|B2|G|1334
*
4V6X|1|B2|U|1496
4V6X|1|B2|G|1497
4V6X|1|B2|A|1498

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AD

40S ribosomal protein S3

Chain AK

40S ribosomal protein S10

Chain AU

40S ribosomal protein S20

Chain Ad

40S ribosomal protein S29

Chain Ah

Plasminogen activator inhibitor 1 RNA-binding protein