IL_4V6X_249

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

ACUAG*CUUCU

Length

10 nucleotides

Bulged bases

4V6X|1|B2|C|1403, 4V6X|1|B2|U|1404

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_249 not in the Motif Atlas

Homologous match to IL_8CRE_459

Geometric discrepancy: 0.3215

The information below is about IL_8CRE_459

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|B2|A|1402
4V6X|1|B2|C|1403
4V6X|1|B2|U|1404
4V6X|1|B2|A|1405
4V6X|1|B2|G|1406
*
4V6X|1|B2|C|1440
4V6X|1|B2|U|1441
4V6X|1|B2|U|1442
4V6X|1|B2|C|1443
4V6X|1|B2|U|1444

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AQ

40S ribosomal protein S16

Chain AU

40S ribosomal protein S20

Chain Ag

Guanine nucleotide-binding protein subunit beta-2-like 1