IL_4V6X_253

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_253 not in the Motif Atlas

Geometric match to IL_5Y85_005

Geometric discrepancy: 0.3768

The information below is about IL_5Y85_005

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

4V6X|1|B2|C|1417
4V6X|1|B2|C|1418
4V6X|1|B2|C|1419
*
4V6X|1|B2|G|1428
4V6X|1|B2|G|1429

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AQ

40S ribosomal protein S16

Chain AT

40S ribosomal protein S19