IL_4V6X_258

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_258 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1521

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

4V6X|1|B2|G|1604
4V6X|1|B2|G|1605
4V6X|1|B2|G|1606
4V6X|1|B2|A|1607
4V6X|1|B2|U|1608
4V6X|1|B2|C|1609
4V6X|1|B2|G|1610
*
4V6X|1|B2|C|1629
4V6X|1|B2|A|1630
4V6X|1|B2|U|1631
4V6X|1|B2|G|1632
4V6X|1|B2|A|1633
4V6X|1|B2|A|1634
4V6X|1|B2|C|1635

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AS

40S ribosomal protein S18

Chain AT

40S ribosomal protein S19