IL_4V6X_266

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UUUA*UUGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_266 not in the Motif Atlas

Geometric match to IL_5C5W_003

Geometric discrepancy: 0.2678

The information below is about IL_5C5W_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

52

Unit IDs

4V6X|1|B2|U|1728
4V6X|1|B2|U|1729
4V6X|1|B2|U|1730
4V6X|1|B2|A|1731
*
4V6X|1|B2|U|1803
4V6X|1|B2|U|1804
4V6X|1|B2|G|1805
4V6X|1|B2|A|1806

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain AI

40S ribosomal protein S8

Chain CV

60S ribosomal protein L23