IL_4V6X_277

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCUGGGAAGGCC*GCAGCAGCACUCGC

Length

26 nucleotides

Bulged bases

4V6X|1|A5|G|729, 4V6X|1|A5|G|933, 4V6X|1|A5|C|934, 4V6X|1|A5|C|936, 4V6X|1|A5|C|938

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|A5|G|726
4V6X|1|A5|C|727
4V6X|1|A5|U|728
4V6X|1|A5|G|729
4V6X|1|A5|G|730
4V6X|1|A5|G|731
4V6X|1|A5|A|732
4V6X|1|A5|A|733
4V6X|1|A5|G|734
4V6X|1|A5|G|735
4V6X|1|A5|C|736
4V6X|1|A5|C|737
*
4V6X|1|A5|G|927
4V6X|1|A5|C|928
4V6X|1|A5|A|929
4V6X|1|A5|G|930
4V6X|1|A5|C|931
4V6X|1|A5|A|932
4V6X|1|A5|G|933
4V6X|1|A5|C|934
4V6X|1|A5|A|935
4V6X|1|A5|C|936
4V6X|1|A5|U|937
4V6X|1|A5|C|938
4V6X|1|A5|G|939
4V6X|1|A5|C|940

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CF

60S ribosomal protein L7

Chain CM

60S ribosomal protein L14

Chain CS

60S ribosomal protein L18a