IL_4V6X_279

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CAC*GAGGUUCUCUCGGG

Length

17 nucleotides

Bulged bases

4V6X|1|A5|A|1222, 4V6X|1|A5|G|1223, 4V6X|1|A5|G|1224, 4V6X|1|A5|U|1225, 4V6X|1|A5|U|1226, 4V6X|1|A5|C|1227, 4V6X|1|A5|U|1228, 4V6X|1|A5|C|1229, 4V6X|1|A5|U|1230

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|A5|C|1077
4V6X|1|A5|A|1078
4V6X|1|A5|C|1079
*
4V6X|1|A5|G|1221
4V6X|1|A5|A|1222
4V6X|1|A5|G|1223
4V6X|1|A5|G|1224
4V6X|1|A5|U|1225
4V6X|1|A5|U|1226
4V6X|1|A5|C|1227
4V6X|1|A5|U|1228
4V6X|1|A5|C|1229
4V6X|1|A5|U|1230
4V6X|1|A5|C|1231
4V6X|1|A5|G|1232
4V6X|1|A5|G|1233
4V6X|1|A5|G|1234

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CE

60S ribosomal protein L6

Chain CF

60S ribosomal protein L7