IL_4V6X_290

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CAGUCGAGAGUGGACGGGAGCGGCGGGGGCGGCGCGCGCGCG*CCCCCGGAGCCCCGCGGACGCUACG

Length

67 nucleotides

Bulged bases

4V6X|1|A5|U|2090, 4V6X|1|A5|A|2093, 4V6X|1|A5|G|2094, 4V6X|1|A5|A|2095, 4V6X|1|A5|G|2096, 4V6X|1|A5|U|2097, 4V6X|1|A5|G|2111, 4V6X|1|A5|G|2112, 4V6X|1|A5|G|2113, 4V6X|1|A5|G|2114, 4V6X|1|A5|G|2115, 4V6X|1|A5|C|2116, 4V6X|1|A5|C|2119, 4V6X|1|A5|C|2123, 4V6X|1|A5|G|2124, 4V6X|1|A5|C|2248, 4V6X|1|A5|C|2249, 4V6X|1|A5|C|2256, 4V6X|1|A5|G|2259, 4V6X|1|A5|C|2264, 4V6X|1|A5|U|2267, 4V6X|1|A5|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|A5|C|2087
4V6X|1|A5|A|2088
4V6X|1|A5|G|2089
4V6X|1|A5|U|2090
4V6X|1|A5|C|2091
4V6X|1|A5|G|2092
4V6X|1|A5|A|2093
4V6X|1|A5|G|2094
4V6X|1|A5|A|2095
4V6X|1|A5|G|2096
4V6X|1|A5|U|2097
4V6X|1|A5|G|2098
4V6X|1|A5|G|2099
4V6X|1|A5|A|2100
4V6X|1|A5|C|2101
4V6X|1|A5|G|2102
4V6X|1|A5|G|2103
4V6X|1|A5|G|2104
4V6X|1|A5|A|2105
4V6X|1|A5|G|2106
4V6X|1|A5|C|2107
4V6X|1|A5|G|2108
4V6X|1|A5|G|2109
4V6X|1|A5|C|2110
4V6X|1|A5|G|2111
4V6X|1|A5|G|2112
4V6X|1|A5|G|2113
4V6X|1|A5|G|2114
4V6X|1|A5|G|2115
4V6X|1|A5|C|2116
4V6X|1|A5|G|2117
4V6X|1|A5|G|2118
4V6X|1|A5|C|2119
4V6X|1|A5|G|2120
4V6X|1|A5|C|2121
4V6X|1|A5|G|2122
4V6X|1|A5|C|2123
4V6X|1|A5|G|2124
4V6X|1|A5|C|2125
4V6X|1|A5|G|2126
4V6X|1|A5|C|2127
4V6X|1|A5|G|2128
*
4V6X|1|A5|C|2246
4V6X|1|A5|C|2247
4V6X|1|A5|C|2248
4V6X|1|A5|C|2249
4V6X|1|A5|C|2250
4V6X|1|A5|G|2251
4V6X|1|A5|G|2252
4V6X|1|A5|A|2253
4V6X|1|A5|G|2254
4V6X|1|A5|C|2255
4V6X|1|A5|C|2256
4V6X|1|A5|C|2257
4V6X|1|A5|C|2258
4V6X|1|A5|G|2259
4V6X|1|A5|C|2260
4V6X|1|A5|G|2261
4V6X|1|A5|G|2262
4V6X|1|A5|A|2263
4V6X|1|A5|C|2264
4V6X|1|A5|G|2265
4V6X|1|A5|C|2266
4V6X|1|A5|U|2267
4V6X|1|A5|A|2268
4V6X|1|A5|C|2269
4V6X|1|A5|G|2270

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CE

60S ribosomal protein L6

Chain CF

60S ribosomal protein L7

Chain CQ

60S ribosomal protein L18

Chain Cr

60S ribosomal protein L28