IL_4V6X_297

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAACGCG*CUAAGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_297 not in the Motif Atlas

Homologous match to IL_8P9A_365

Geometric discrepancy: 0.3059

The information below is about IL_8P9A_365

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41504.1

Basepair signature

cWW-tSH-L-R-L-tHH-cWW

Number of instances in this motif group

5

Unit IDs

4V6X|1|A7|G|21
4V6X|1|A7|A|22
4V6X|1|A7|A|23
4V6X|1|A7|C|24
4V6X|1|A7|G|25
4V6X|1|A7|C|26
4V6X|1|A7|G|27
*
4V6X|1|A7|C|52
4V6X|1|A7|U|53
4V6X|1|A7|A|54
4V6X|1|A7|A|55
4V6X|1|A7|G|56
4V6X|1|A7|C|57

Current chains

Chain A7

5S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L5

Chain CJ

60S ribosomal protein L11